1. Doerner, P (2020): Extreme environments: crucibles of potent abiotic stress tolerance. Special issue editorial. Journal of Experimental Botany 71 3761, doi:10.1093/jxb/eraa269
  2. Concha, C. and Doerner, P (2020): The impact of the Rhizobia–legume symbiosis on host root system architecture. Journal of Experimental Botany 71 3902, doi:10.1093/jxb/eraa198.
  3. Bontpart T, Concha C, Giuffrida V, Robertson I, Admkie K, Degefu T, Girma, N, Tesfaye K, Haileselassie T, Fikre A, Fetene M, Tsaftaris S, Doerner, P (2020): Affordable and robust phenotyping framework to analyse root system architecture of soil-grown plants. The Plant Journal. 103 2330; doi:
  4. Chen H, Giuffrida MV, Doerner P, Tsaftaris S. (2019): Leaf Counting Without Annotations Using Adversarial Unsupervised Domain Adaptation, CVPPP 2019, CVPR Workshop
  5. Machin, F., Beckers, M., Fairnie, A., Cheng, T., Tian, X., Scheible, W.-R., Doerner, P. (2018): Inducible reporter/driver lines for the Arabidopsis root with intrinsic reporting of activity state. The Plant Journal. 98 153-164 doi: 10.1111/tpj.14192
  6. Giuffrida, MV., Doerner, P. and Tsaftaris, S. (2018): Pheno-Deep Counter: a unified and versatile deep learning architecture for leaf counting. Plant J 96 880-890; doi: 10.1111/tpj.14064l
  7. Hanchi M, Thibaud MC, Légeret B, Kuwata K, Pochon N, Beisson F, Cao A, Cuyas L, David P, Doerner P, Ferjani A, Lai F, Li-Beisson Y, Mutterer J, Philibert M, Raghothama KG, Rivasseau C, Secco D, Whelan J, Nussaume L, Javot H. (2018): The Phosphate Fast-Responsive Genes PECP1 and PPsPase1 Affect Phosphocholine and Phosphoethanolamine Content. Plant Physiol. 2018 176 2943-2962
  8. Weimer, AK, Biedermann, S., Harashima, H., Farshad Roodbarkelari, F., Takahashi, N., Foreman, J., Guan, Y., Pochon, G., Maren Heese, M., Daniël Van Damme, D., Sugimoto, K., Koncz, C., Doerner, P., Umeda, M., and Schnittger, A. (2016): The plant specific CDKB1-CYCB1 complex mediates homologous recombination repair in Arabidopsis. EMBO Journal 35 2068–2086
  9. Pacheco-Escobedo, M.A., Ivanov, V.B., Ransom-Rodríguez, I., Arriaga-Mejía, G., Ávila, H., Baklanov, I.A., Pimentel, A., Corkidi, G., Doerner, P., Dubrovsky, J.G., Álvarez-Buylla, E.R., Garay-Arroyo, A. (2016): Longitudinal zonation pattern in the Arabidopsis root and its determination by multiple structural change algorithms. Annals of Botany 118 763-776
  10. Tian, X and Doerner, P: Root resource foraging: does it matter? Frontiers in Plant Systems Biology (2013) doi: 10.3389
  11. Fan, J and Doerner, P: Genetic and molecular basis of nonhost disease resistance: complex, yes; silver bullet, no. Current Opinion in Plant Biology (2012) 15 400
  12. Fan, J., Crooks, C., Creissen, G., Hill, L., Fairhurst, S., Doerner, P. and Lamb, C (2011): Pseudomonas saxGenes overcome aliphatic isothiocyanate-mediated non-host resistance in Arabidopsis. Science 331 1185
  13. Doerner, P.: Development: Confused root cells have mixed identity in Schizoriza. Current Biology, 20 (2010) R246-8
  14. Brownfield, L., Hafidh, S., Durbarry, A., Khatab, H., Sidorova, A., Doerner, P. and Twell, D. (2009): ArabidopsisDUO POLLEN 3 is a novel regulator of male germline development and embryogenesis. Plant Cell 21 1940-1956.
  15. Ubeda-Tomás, S., Federici, F., Casimiro, I., Beemster, G.T.S., Bhalerao, R., Swarup, R., Doerner, P., Haseloff, J. and Bennett, M.J. (2009): Gibberellin signaling in the endodermis controls Arabidopsis root meristem size. Current Biology 19 1194-9.
  16. Fan, J., Hill, L., Crooks, C., Doerner, P., and Lamb, C. (2009): Abscisic acid has a key role in modulating diverse plant-pathogen interactions. Plant Physiology 150 1750-1761.
  17. Doerner, P.: Plant Roots: Recycled auxin energizes patterning and growth Current Biology, 18 (2008) R72-74
  18. Doerner, P. (2008): Signals and Mechanisms in the Control of Plant Growth, in: Plant Growth Signaling, Plant Cell Monographs 10, 1-23
  19. Doerner, P.: Phosphate starvation signaling: a threesome controls systemic Pi homeostasis. Current Opinion in Plant Biology (2008) 11 536.
  20. Doerner, P.: Plant Meristems: Cytokinins — The Alpha and Omega of the Meristem Current Biology 17 (2007) R321-23
  21. Lai, F., Thacker, J., Li, YY. and Doerner, P. (2007): Cell division activity determines the magnitude of phosphate starvation responses in Arabidopsis. Plant Journal 50 545-556
  22. Doerner, P. (2007): Transcriptional Control of the Plant Cell Cycle, in Plant Cell Division, Plant Cell Monographs9, 13-32
  23. Doerner, P.: Plant Meristems: The fiendish SU DOKU of stem cell maintenance Current Biology 16 (2006) R199-201
  24. Culligan, K.M., Robertson, C.E., Foreman, J., Doerner, P. and Britt, A.B. (2006): ATR and ATM play both distinct and additive roles in response to ionizing radiation. Plant Journal 48 947-961
  25. Doerner, P.: Plant meristems: What you see is what you get? Current Biology 16 (2006) R56-58
  26. Keller, T., Abbott, J., Moritz, T, and Doerner, P. (2006): Arabidopsis REGULATOR OF AXILLARY MERISTEMS1controls a leaf axil stem cell niche and modulates vegetative development. The Plant Cell 18 598-611
  27. Li, C., Potuschak, T., Colón-Carmona, A., Gutiérrez, R.A. and Doerner, P. (2005): Arabidopsis TCP20 links regulation of growth and cell division control pathways. Proceedings National Academy of Sciences USA 10212978-12983
  28. Doerner, P.: Plant meristems: a merry-go-round of signals. Current Biology 13 (2003) R368-374
  29. Maldonado, A.M., Doerner, P., Dixon, R.A., Lamb, C. and Cameron, R.K. (2002): A putative lipid transfer protein involved in systemic resistance signaling in Arabidopsis, Nature 419 319-403.
  30. Lindsay WP, McAlister FM, Zhu Q, He XZ, Dröge-Laser W, Hedrick S, Doerner P, Lamb C, Dixon RA. (2002): KAP-2, a protein that binds to the H-box in a bean chalcone synthase promoter, is a novel plant transcription factor with sequence identity to the large subunit of human Ku autoantigen. Plant Molecular Biology 49 503-514.
  31. Doerner, P. (2001): Quantitative Analysis of Root Growth.  56-59. In: Weigel, D., and Glazebrook, J. Arabidopsis-A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
  32. Doerner, P.: WUSCHEL, LEAFY and AGAMOUS: A ménage à trois to end it all. Current Biology 11 (2001) R785-R787
  33. Dubrovsky, J., Rost, T., Colon, A. and Doerner, P (2001):  Early primordium morphogenesis during lateral root initiation in Arabidopsis thaliana. Planta 214 30-36.
  34. Vitart, V., Baxter, I., Doerner, P., and Harper, JF. (2001): Evidence for a role in growth and salt resistance of a plasma membrane H+-ATPase in the root endodermis. Plant Journal 27 191-201.
  35. Potuschak, T and Doerner, P: Cell cycle controls: genome-wide analysis in Arabidopsis. Current Opinion in Plant Biology 4 (2001) 501-506
  36. Boisnard-Lorig, C., Colon-Carmona, A., Bauch, M., Hodge, S., Doerner, P., Bancharel, E., Dumas, C., Haseloff, J., and Berger, F. (2001): Dynamic analyses of the expression of the histone::YFP fusion protein in Arabidopsisshow that syncytial endosperm is divided in mitotic domains. Plant Cell 13 495-509
  37. Dubrovsky, J., Doerner, P., Colon, A. and Rost, T. (2000): Pericycle cell proliferation and lateral root initiation in Arabidopsis thaliana, Plant Physiology, 124 1648-1657.
  38. Doerner, P. (2000): Cell division control, Chapter 11. 528-565. In: Biochemistry and Molecular Biology of Plants, B. Buchanan, W. Gruissem and R. Jones
  39. Doerner, P.: Plant stem cells: The only constant thing is change. Current Biology 10 (2000) R826-829
  40. Doerner, P.: Root Patterning: Does auxin provide a positional signal? Current Biology 10 (2000) R201-3.
  41. Doerner, P.: Shoot Meristems: Intercellular signals keep the balance, Current Biology 9 (1999) R377-380
  42. Colón-Carmóna, A., You, R., Haimovitch-Gal, T. and Doerner, P. (1999):  Spatio-temporal analysis of mitotic activity with a labile cyclin-GUS fusion protein. Plant Journal, 20 503-508
  43. Keller, T., Damude, H.G., Werner, D., Doerner, P., Dixon, R.A. and Lamb, C. (1998): A plant homolog of the neutrophil NADPH oxidase gp91phox subunit gene encodes a plasma membrane protein with Ca2+-binding motifs. Plant Cell 10 255-266
  44. Doerner, P.: Quiescent center not so mute after all, Current Biology 8 (1998) R42-R44
  45. Dröge-Laser, W., Kaiser, A., Lindsay, W. P., Halkier, B. A., Loake, G. J., Doerner, P., Dixon, R.A. and Lamb C. (1997): Rapid stimulation of a soybean protein-serine kinase that phosphorylates a novel bZIP DNA-binding protein, G/HBF-1, during the induction of early transcription-dependent defenses. EMBO Journal 16 726-738
  46. Weigel, D. and Doerner, P.: Taking cues from the neighbors, Current Biology 6 (1996) 10-13
  47. Doerner, P., Jørgensen, J.E., You, R., Steppuhn, J., and Lamb, C.J. (1996): Control of root growth and development by cyclin expression, Nature, 380 520-523
  48. Doerner, P.: Radicle Development(s), Current Biology 5 (1995) 110-112
  49. Vera, P., Lamb, C.J. and Doerner, P.W. (1994): Cell-cycle regulation of hydroxyproline-rich glycoprotein HRGPnt3 gene expression during the initiation of lateral root meristems, Plant Journal 6 717-727
  50. Nelson, A.J., Doerner, P.W., Zhu, Q. and Lamb C.J. (1994): Isolation of a monocot 3-hydroxy-3-methylglutaryl coenzyme A reductase gene that is elicitor inducible. Plant Molecular Biology, 25 401-412
  51. Doerner, P.: Cell cycle regulation in plants, Plant Physiology 106 (1994) 823-827
  52. Clausen, M., Lamb, C.J., Megnet, R. and Doerner, P.W. (1994): PAD1 encodes phenylacrylic acid decarboxylase which confers resistance to cinnamic acid in Saccharomyces cerevisiae. Gene 142 107-112.
  53. Bate, N.J., Orr, J., Ni, W., Meromi, A., Nadler-Hassar, T., Doerner, P.W., Dixon, R.A., Lamb, C.J. and Elkind, Y. (1994): Quantitative relationship between phenylalanine ammonia-lyase levels and phenylpropanoid accumulation in transgenic tobacco identifies a rate-determining step in natural product synthesis, Proceedings National Academy of Sciences USA, 91 7608-7612
  54. Clausen, M., Lamb, C.J., Megnet, R. and Doerner, P.W.: Hormone inducible expression and metal affinity chromatography of recombinant proteins in S. cerevisiae. Analytical Biochemistry 212 (1993) 537-539
  55. Zhu, Q., Doerner, P.W. and Lamb, C.J. (1993): Stress induction and developmental regulation of a rice chitinase promoter in transgenic tobacco. Plant Journal 3 203-212
  56. Doerner, P.: Patterning the Arabidopsis root, Current Biology 3 (1993) 867-869
  57. Martinez-Gomez, C., Jørgensen, J.-E., Lawton, M.A., Lamb, C.J. and Doerner, P.W. (1992): Spatial pattern of cdc2p34 expression in relation to meristem activity and cell proliferation during plant development. Proceedings National Academy of Sciences USA 89 7360-7364
  58. Blyden, E.R., Doerner, P.W., Lamb, C.J. and Dixon, R.A. (1991): Sequence analysis of a chalcone isomerase cDNA of Phaseolus vulgaris L. Plant Molecular Biology 16 167-169
  59. Doerner, P.W.; Stermer, B.; Schmid, J.; Dixon, R.A. and Lamb, C.J. (1990): Plant defense gene promoter-reporter gene fusions in transgenic plants: tools for identification of novel inducers. Bio/Technology, 8 845-848
  60. Schmid, J.; Doerner, P.W.; Clouse, S.D.; Dixon, R.A. and Lamb, C.J. (1990): Developmental and environmental regulation of a bean chalcone synthase promoter in transgenic tobacco. Plant Cell 2 619-631
  61. Doerner, P.; Piehl, H.; Lehman, J. and Megnet, R. (1983): Process analysis of the acetone-butanol fermentation by quadrupole mass spectrometry. p81-89 in: The Acetone-Butanol Fermentation and related topics. Eds.: J.D. Bu’Lock and A.J. Bu’Lock; Science and Technology Letters, Kew, Surrey
  62. Doerner, P.; Piehl, H.; Lehman, J. and Megnet, R. (1982): Process analysis of the acetone-butanol fermentation by quadrupole mass spectrometry. Biotechnology Letters, 4, 557-563


Research articles published on pre-print servers (not yet peer reviewed)

  1. Bontpart, T., Robertson, I., Giuffrida, V., Concha, C., Scorza, L.C.T., McCormick, A.J., Fikre, A., Tsaftaris, S.A., and Peter Doerner (2020): Chickpea (Cicer arietinum L.) root system architecture adaptation to initial soil moisture improves seed development in dry-down conditions. bioRxiv, DOI 10.1101/2020.09.24.311753
  2. Chen H, Giuffrida MV, Doerner P, Tsaftaris S. (2019): Blind Inpainting of Large-scale Masks of Thin Structures with Adversarial and Reinforcement Learning, arXiv:1912.02470v1 (